Things are slowly coming together for NMPDR version 21. The word search is mostly working, and I am finishing the fixes to the other feature-based search. Once this is done, the remaining tasks are
- Adding an XML download format.
- Reinstalling the FASTA download format for feature-based searches.
- Fixing the Drug Search. This is not a search for drug targets, but rather a report on the docking results we already have.
There was a bug in the pattern search because the formatter was removing spaces from the pattern string. This has been fixed.
I am currently running the difference report. I added coupling and BBH statistics, both of which have slowed the report considerably, which is why it is still going on. Since this report is not run very frequently, I don't consider that a big problem. Once the report is done, the data will appear here.
This weekend I will re-run the attribute report, which will give me the information I need to begin implementing a drug target search (as opposed to a docking result report). I don't wan to start the attribute report until the difference report is finished.
Finally, I am meeting with Ross on Monday to discuss implementing a close-strain comparison tool. This has become a little more urgent because one of the site users requested it.
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